NH BioMade Publications

Efficient and robust stress integration algorithm for anisotropic distortional hardening law under cross-loading with latent hardening.
August 2022

Lee, J., Bong, H. J., & Ha, J.
August 2022
European Journal of Mechanics - A/Solids, 96, 104775. doi: 10.1016/j.euromechsol.2022.104775

Structural models of viral insulin‐like peptides and their analogs. Proteins: Structure, Function, and Bioinformatics.
August 2022

Gorai, B., & Vashisth, H.
August 2022
Portico. doi: 10.1002/prot.26410

Nanostructured Cyclodextrin-Mediated Surface for Capacitive Determination of Cortisol in Multiple Biofluids
August 2022

Panahi, Z., Ren, T., & Halpern, J. M.
August 2022
ACS Applied Materials & Interfaces, 14(37), 42374–42387. doi: 10.1021/acsami.2c07701

Role of Mutations in Differential Recognition of Viral RNA Molecules by Peptides
July 2022

Kumar, A. & Vashisth, H.
July 2022
Journal of Chemical Information and Modeling, 62(14), 3381–3390. doi: 10.1021/acs.jcim.2c00376

Self-Assembly in Mixtures of Charged Lobed Particles
July 2022

Arpita Srivastava, Brunno C. Rocha, & Harish Vashisth
JULY 2022
Frontiers in Physics doi: 10.3389/fphy.2022.936385

Crystal plasticity modeling of strain-induced martensitic transformations to predict strain rate and temperature sensitive behavior of 304 L steels: Applications to tension, compression, torsion, and impact.
July 2022

Feng, Z., Pokharel, R., Vogel, S. C., Lebensohn, R. A., Pagan, D., Zepeda-Alarcon, E., Clausen, B., Martinez, R., Gray, G. T., & Knezevic, M.
April 2022 
International Journal of Plasticity, 156, 103367. doi: 10.1016/j.ijplas.2022.103367

Energy dissipation pathway control in polymer derived ceramic (PDC) composites
Yan Li, Chi Ma, & K. Larkin
July 2022

Journal of Dynamic Behavior of Materials. doi: 10.1007/s40870-022-00344-9

Protocol for deposition of conductive oxides onto 3D-printed materials for electronic device applications
Julia Huddy & William Scheideler
July 2022

STAR Protocols. doi: 10.1016/j.xpro.2022.101523

A wearable graphene transistor-based biosensor for monitoring IL-6 biomarker
Kaitlyn E. Laliberte, Patrick Scott, Niazul I. Khan, Md Shaad Mahmud, Edward Song
June 2022

Microelectronic Engineering doi: 10.1016/j.mee.2022.111835

Fast-Curing Injectable Microporous Hydrogel for In Situ Cell Encapsulation
Seth D. Edwards, Shujie Hou, Jason M. Brown, Ryann D. Boudreau, Yuhan Lee, Young Jo Kim, Kyung Jae Jeong
May 2022

ACS Applied Bio Materials doi: 10.1021/acsabm.2c00214

Molecular interactions and inhibition of the SARS-CoV-2 Main Protease by a Thiadiazolidinone derivative
Jacob Andrzejczyk, Katarina Jovic, Logan M. Brown, Valerie G. Pascetta, Krisztina Varga, Harish Vashisth
May 2022

Proteins: Structure, Function, and Bioinformatics doi: 10.1002/prot.26385

Plastic anisotropy evolution of SS316L and modeling for novel cruciform specimen.
May 2022

Mamros, E., Mayer, S., Banerjee, D., Iadicola, M., Kinsey, B., & Ha, J.
May 2022
doi: 10.1016/j.ijmecsci.2022.107663

Inducing <111> texture in AA5182-O through continuous-bending-under-tension and recovery heat treatment processes to influence r-values
Jinjin Ha, Sarah Mayer, Zhangxi Feng, Nikolai Matukhno, Marko Knezevic, Brad L. Kinsey
May 2022

CIRP Annals doi: 10.1016/j.cirp.2022.04.059

Coupling of a multi-GPU accelerated elasto-visco-plastic fast Fourier transform constitutive model with the implicit finite element method
Adnan Eghtesada, Kai Germaschewskib, Marko Knezevic
March 2022

Computational Materials Science   doi: 10.1016/j.commatsci.2022.111348

Healthcare data analytics for wearable sensors
M.S. Mahmud
March 2022

Mahmud, M.S. (2022) "Healthcare data analytics for wearable sensors". In E.M. Narvaez, C. Dincer (Ed.). Wearable Physical, Chemical and Biological Sensors: Fundamentals, Materials and Applications (pages 169-182). Elsevier. doi: 10.1016/c2019-0-04003-4

Transforming 3D-printed mesostructures into multimodal sensors with nanoscale conductive metal oxides
Julia E. Huddy, Md Saifur Rahman, Andrew B. Hamlin, Youxiong Ye, William J. Scheideler
February 2022

Cell Reports Physical Science doi: 10.1016/j.xcrp.2022.100786

Shear enhancement of mechanical and microstructural properties of synthetic graphite and ultra-high molecular weight polyethylene carbon composites
Hannah J. Favreau, Kateryna I. Miroshnichenko, Peder C. Solberg, Igor I. Tsukrov, Douglas W. Van Citters
January 2022

Journal of Applied Polymer Science doi: 10.1002/app.52175

Tunable Multilobe Particle Geometry by Annealing-Assisted Emulsion Polymerization
Yung-Chun Lin, Amit K. Tripathi, and John G. Tsavalas
December 2021

ACS Applied Polymer Materials. doi: 10.1021/acsapm.1c01312

3D Bio-Printability of Hybrid Pre-Crosslinked Hydrogels
Cartwright Nelson, Slesha Tuladhar, Loren Launen and Ahasan Habib
December 2021

International Journal of Molecular Sciences.  doi: 10.3390/ijms222413481

Probing secondary coordination sphere interactions within porphyrin-cored polymer nanoparticles
Brian F. Patenaude, Erik B. Berda and Samuel Pazicni
December 2021

Polymer Chemistry. doi: 10.1039/D1PY01005K

Conductive Stimuli-Responsive Coordination Network Linked with Bismuth for Chemiresistive Gas Sensing
Aykanat, A., Jones, C. G., Cline, E., Stolz, R. M., Meng, Z., Nelson, H. M., & Mirica, K. A.
December 2021

ACS Applied Materials & Interfaces  doi: 10.1021/acsami.1c14453

Bimetallic TwoDimensional MetalOrganic Frameworks for Chemiresistive Detection of Carbon Monoxide
Aylin Aykanat, Zheng Meng, Robert M. Stolz, Colin T. Morrell, Katherine A. Mirica
November 2021

Angewandte Chemie International Edition. doi: 10.1002/anie.202113665

Covalent organic frameworks as multifunctional materials for chemical detection
Meng, Z. & Mirica, K.
November 2021

Chemical Society Reviews doi: 10.1039/d1cs00600b

Unraveling the Electrical and Magnetic Properties of Layered Conductive Metal Organic Framework With Atomic Precision
Zheng Meng, Christopher G. Jones, Sidra Farid, Islam Ullan Khan, Hosea M. Nelson, Katherine A. Mirica
November 2021

Angewandte Chemie International Edition. doi: 10.1002/anie.202113569

Water Dynamics in a Peptide-appended Pillar[5]arene Artificial Channel in Lipid and Biomimetic Membranes
Barden, D. R., & Vashisth, H.
October 2021

Frontiers in Chemistry. doi: 10.3389/fchem.2021.753635

Role of salt-bridging interactions in recognition of viral RNA by arginine-rich peptides
Harish Vashisth, Lev Levintov
October 2021

Biophysical Journal. doi: 10.1016/j.bpj.2021.10.007

Modeling of Phase Transition in Fabrication of Polymer-Derived Ceramics (PDCS)
Chi Ma, Yan Li
October 2021

International Journal of Computational Materials Science and Engineering. doi: 10.1142/s2047684121500329

Self-Assembly of Porous Structures From a Binary Mixture of Lobed Patchy Particles
Paul, S. & Vashisth, H.
October 2021

Frontiers in Physics. doi: 10.3389/fphy.2021.767623.

Structures and interactions of insulin-like peptides from cone snail venom
Biswajit Gorai, Harish Vashisth
October 2021

Proteins. doi: 10.1002/prot.26265

Conformational dynamics and energetics of viral RNA recognition by lab-evolved proteins
Kumar, A. & Vashisth, H.
October 2021

Physical Chemistry Chemical Physics. doi: 10.1039/d1cp03822b

Recent Advances in Non-Enzymatic Electrochemical Detection of Hydrophobic Metabolites in Biofluids
Panahi, Z., Custer, L., & Halpern, J. M.
October 2021

Sensors and Actuators Reports. doi: 10.1016/j.snr.2021.100051.

Effects of plasticity-induced martensitic transformation and grain refinement on the evolution of microstructure and mechanical properties of a metastable high entropy alloy
Bhowmik, S., Zhang, J., Vogel, S., Nene, S., Mishra, R., McWilliams, B. & Knezevic, M.
September 2021

Journal of Alloys and Compounds. doi: 10.1016/j.jallcom.2021.161871.

A surprisingly gentle approach to cavity containing spherocylindrical microparticles from ordinary polymer dispersions in flow
Tripathi, A. & Tsavalas, J.
August 2021

Materials Horizons. doi: 10.1039/d1mh01108a.

A Heteromeric Carboxylic-acid-based Single Crystalline Crosslinked Organic Framework
Liang, R., Samanta, J., Shao, B., Zhang, M., Staples, R., Chen, A., Tang, M., Wu, Y., Aprahamian, I. & Ke, C.
August 2021

Angewandte Chemie International Edition. doi: 10.1002/anie.202109987

Micromechanical origins of remarkable elongation-to-fracture in AHSS TRIP steels via continuous bending under tension
Sharma, R., Poulin, C., Knezevic, M., Miles, M. & Fullwood, D.
August 2021

Materials Science and Engineering: A. doi: 10.1016/j.msea.2021.141876

Numerical Analysis of SS316L Biaxial Cruciform Specimens Under Proportional Loading Paths
Mamros, E., Eaton, M., Ha, J. & Kinsey, B.
August 2021

Volume 2: Manufacturing Processes; Manufacturing Systems; Nano/Micro/Meso Manufacturing; Quality and Reliability. doi: 10.1115/MSEC2021-59877.

Rheological Analysis of Low Viscosity Hydrogels for 3D Bio-Printing Processes
Tuladhar, S., Nelson, C. & Habib, M.
August 2021

Volume 1: Additive Manufacturing; Advanced Materials Manufacturing; Biomanufacturing; Life Cycle Engineering; Manufacturing Equipment and Automation. doi: 10.1115/msec2021-63658

Designing an Interchangeable Multi-Material Nozzle System for 3D Bioprinting Process
Nelson, C., Tuladhar, S. & Habib, M.
August 2021

Volume 1: Additive Manufacturing; Advanced Materials Manufacturing; Biomanufacturing; Life Cycle Engineering; Manufacturing Equipment and Automation. doi: 10.1115/msec2021-63471

Rheological Study of Highly Thixotropic Hydrogels for 3D Bio- Printing Processes
Slesha Tuladhar, Cartwright Nelson, Md Ahasan Habib
August 2021

Proceedings of the 2021 IISE Annual Virtual Conference.

Phase transition in Polymer Derived Ceramics (PDCs) and its effect on mechanical response
C. Ma & Y. Li,
July 2021

The 12th International Conference on Computational Methods. 

The Effect of Temperature on the Strain-Induced Austenite to Martensite Transformation in SS 316L During Uniaxial Tension
Mamros, E., Bram Kuijer, M., Davarpanah, M., Baker, I. & Kinsey, B.
July 2021

Forming the Future. doi: 10.1007/978-3-030-75381-8_155

Experimental Implementation of SS 316L Cruciform Testing to Achieve Various Deformation Paths
Mamros, E., Mayer, S., Ha, J. & Kinsey, B.
July 2021

 Forming the Future. doi: 10.1007/978-3-030-75381-8_166

Kinetic trapping of 3D-printable cyclodextrin-based poly(pseudo)rotaxane networks
Lin, Q., Li, L., Tang, M., Uenuma, S., Samanta, J., Li, S., … Ke, C.
June 2021

Chem. doi: 10.1016/j.chempr.2021.06.004

Design of Functionalized Lobed Particles for Porous Self-Assemblies
Gorai, B., Rocha, B. & Vashisth, H.
June 2021

 JOM. doi: 10.1007/s11837-021-04715-w

Design of Functionalized Lobed Particles for Porous Self-Assemblies
Gorai, B., Rocha, B. & Vashisth, H.
June 2021

JOM. doi: 10.1007/s11837-021-04715-w

Finite Element Model of Equal Channel Angular Extrusion of Ultra High Molecular Weight Polyethylene
Vasylevskyi, K., Tsukrov, I., Miroshnichenko, K., Buklovskyi, S., Grover, H. & Van Citters, D.
May 2021

 Journal of Manufacturing Science and Engineering. doi: 10.1115/1.4051189

Modeling of plasticity-induced martensitic transformation to achieve hierarchical, heterogeneous, and tailored microstructures in stainless steels
Feng, Z., Mamros, E., Ha, J., Kinsey, B. & Knezevic, M.
May 2021

CIRP Journal of Manufacturing Science and Technology. doi: 10.1016/j.cirpj.2021.04.006

Role of conformational heterogeneity in ligand recognition by viral RNA molecules
Levintov, L. & Vashisth, H.
April 2021

Physical Chemistry Chemical Physics. doi: 10.1039/d1cp00679g

Enhanced Porosity in Self-Assembled Morphologies Mediated by Charged Lobes on Patchy Particles
Rocha, B., Paul, S. & Vashisth, H.
March 2021

The Journal of Physical Chemistry B. doi: 10.1021/acs.jpcb.0c11096

Identification of crystal plasticity model parameters by multi-objective optimization integrating microstructural evolution and mechanical data
Savage, D., Feng, Z. & Knezevic, M.
March 2021

Computer Methods in Applied Mechanics and Engineering. doi: 10.1016/j.cma.2021.113747

Thermo-hydrogen refinement of microstructure to improve mechanical properties of Ti-6Al-4V fabricated via laser powder bed fusion
Knezevic, M., Ghorbanpour, S., Ferreri, N., Riyad, I., Kudzal, A., Paramore, J., Vogel, S. & McWilliams, B.
February 2021

Materials Science and Engineering: A. doi: 10.1016/j.msea.2021.140980

An Integrated Design of a Polypseudorotaxane‐based Sea Cucumber Mimic
Li, L., Lin, Q., Tang, M., Tsai, E. & Ke, C.
February 2021

 Angewandte Chemie International Edition. doi: 10.1002/anie.202017019

Reaction Coordinate and Thermodynamics of Base Flipping in RNA
Levintov, L., Paul, S. & Vashisth, H.
February 2021

Journal of Chemical Theory and Computation. doi: 10.1021/acs.jctc.0c01199

On numerical modeling of equal channel angular extrusion of ultra high molecular weight polyethylene
Vasylevskyi, K., Miroshnichenko, K., Buklovskyi, S., Tsukrov, I., Grover, H. & Van Citters, D.
February 2021

ASME 2020 International Mechanical Engineering Congress and Exposition. doi: 10.1115/imece2020-24111

Origins of high ductility exhibited by an extruded magnesium alloy Mg-1.8Zn-0.2Ca: experiments and crystal plasticity modeling
Wang, J., Zhu, G., Wang, L., Vasilev, E., Park, J., Sha, G., Zeng, X. & Knezevic, M.
February 2021

Journal of Materials Science & Technology, doi: 10.1016/j.jmst.2020.12.047

Analytical Investigation of Varying Deformation Paths Using Microtube Inflation and Axial Tension
Mamros, EM, Kinsey, BL, & Korkolis, YP
January 2021

Proceedings of the ASME 2020 15th International Manufacturing Science and Engineering Conference. Volume 2: Manufacturing Processes; Manufacturing Systems; Nano/Micro/Meso Manufacturing; Quality and Reliability. September 3, 2020. V002T08A012. ASME. doi:10.1115/MSEC2020-8372

Allosteric Pathways Originating at Cysteine Residues in Regulators of G-Protein Signaling Proteins
Liu, Y. & Vashisth, H.
December 2020

Biophysical Journal, doi: 10.1016/j.bpj.2020.12.010

Experimental Investigation and Plasticity Modeling of SS316L Microtubes Under Varying Deformation Paths
Mamros, E., Ha, J., Korkolis, Y. & Kinsey, B.
December 2020

 Journal of Micro and Nano-Manufacturing, doi: 10.1115/1.4049364

Hierarchical Tuning of the Performance of Electrochemical Carbon Dioxide Reduction Using Conductive Two-Dimensional Metallophthalocyanine Based Metal–Organic Frameworks
Meng, Z., Luo, J., Li, W. & Mirica, K.
December 2020

Journal of the American Chemical Society, doi: 10.1021/jacs.0c07041

Coupling kinetic Monte Carlo and finite element methods to model the strain path sensitivity of the isothermal stress-assisted martensite nucleation in TRIP-assisted steels
Cluff, S., Knezevic, M., Miles, M., Fullwood, D., Mishra, R., Sachdev, A., Brown, T. & Homer, E.
December 2020

 Mechanics of Materials, 154, 103707. doi: 10.1016/j.mechmat.2020.103707

100th Anniversary of Macromolecular Science Viewpoint: Re-examining Single-Chain Nanoparticles
Chen, R. & Berda, E
December 2020

ACS Macro Letters, 9, 1836-1843. doi: 10.1021/acsmacrolett.0c00774

Melanin pigments extracted from horsehair as antibacterial agents
Rahmani Eliato, T., Smith, J., Tian, Z., Kim, E., Hwang, W., Andam, C. & Kim, Y.
November 2020

Journal of Materials Chemistry B, doi: 10.1039/d0tb02475a

A full-field crystal plasticity model including the effects of precipitates: Application to monotonic, load reversal, and low-cycle fatigue behavior of Inconel 718
Eghtesad, A. & Knezevic, M.
November 2020

Materials Science and Engineering: A. doi: 10.1016/j.msea.2020.140478

Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway
Gupta, R., Liu, Y., Wang, H., Nordyke, C., Puterbaugh, R., Cui, W., Varga, K., Chu, F., Ke, H., Vashisth, H. & Cote, R.
September 2020

Journal of Molecular Biology. doi: 10.1016/j.jmb.2020.08.026

Self-assembly behavior of experimentally realizable lobed patchy particles
Paul, S. & Vashisth, H.
August 2020

Soft Matter, 16, 8101-8107. doi: 10.1039/d0sm00954g

Role of Entropy in Colloidal Self-Assembly
Rocha, B., Paul, S. & Vashisth, H.
August 2020

Entropy, 22(8), 877. doi:10.3390/e22080877

Stress-assisted (γ→α′) and strain-induced (γ→ε→α′) phase transformation kinetics laws implemented in a crystal plasticity model for predicting strain path sensitive deformation of austenitic steels
Feng, Z., Zecevic, M. & Knezevic, M.
July 2020

 International Journal of Plasticity, 136, 102807. doi: 10.1016/j.ijplas.2020.102807

Host–Guest Interactions and Redox Activity in Layered Conductive Metal–Organic Frameworks
Stolz, R., Mahdavi-Shakib, A., Frederick, B. & Mirica, K.
July 2020

Chemistry of Materials. doi: 10.1021/acs.chemmater.0c01007

Two-dimensional d-π conjugated metal-organic framework based on hexahydroxytrinaphthylene
Meng, Z. & Mirica, K.
July 2020

Nano Research. doi: 10.1007/s12274-020-2874-x

Ligand Recognition in Viral RNA Necessitates Rare Conformational Transitions
Levintov, L. & Vashisth, H.
June 2020

The Journal of Physical Chemistry Letters. doi:10.1021/acs.jpclett.0c01390

Molecular Engineering of Multifunctional Metallophthalocyanine-Containing Framework Materials
Aykanat, A., Meng, Z., Benedetto, G. & Mirica, K.
June 2020

Chemistry of Materials. doi: 10.1021/acs.chemmater.9b05289

Effects of heat treatment and build orientation on the evolution of ϵ and α′ martensite and strength during compressive loading of additively manufactured 304L stainless steel
Ferreri, N., Pokharel, R., Livescu, V., Brown, D., Knezevic, M., Park, J., Torrez, M. & Gray, G.
May 2020

Acta Materialia, 195, 59-70. doi: 10.1016/j.actamat.2020.04.036

Employing Conductive Metal-Organic Frameworks for Voltammetric Detection of Neurochemicals
Ko, M., Mendecki, L., Eagleton, A., Durbin, C., Stolz, R., Meng, Z. & Mirica, K.
March 2020

Journal of the American Chemical Society. doi: 10.1021/jacs.9b13402

Functional Nanoassemblies with Mirror-Image Chiroptical Properties Templated by a Single Homochiral DNA Strand
Tannir, S., Levintov, L., Townley, M., Leonard, B., Kubelka, J., Vashisth, H., Varga, K. & Balaz, M.
March 2020

Chemistry of Materials. doi: 10.1021/acs.chemmater.9b04092

Self-assembly of lobed particles into amorphous and crystalline porous structures
Paul, S. & Vashisth, H.
December 2019

Soft Matter. doi:10.1039/c9sm01878f

Thermo-responsive 3D-printed polyrotaxane monolith
Lin, Q., Tang, M., & Ke, C
October 2019

Polymer Chemistry. doi:10.1039/c9py01510h

Conformational dynamics and interfacial interactions of peptide-appended pillar[5]arene water channels in biomimetic membranes
Liu, Y. & Vashisth, H.
August 2019

Physical Chemistry Chemical Physics, 2019. doi: 10.1039/c9cp04408f

Phase space and collective variable based simulation methods for studies of rare events
Paul, S., Nair, N. N., & Vashisth, H.
June 2019

Molecular Simulation, 45(14-15), 1273–1284. doi: 10.1080/08927022.2019.1634268

Two-Dimensional Chemiresistive Covalent Organic Framework with High Intrinsic Conductivity
Meng, Z., Stolz, R. M., & Mirica, K. A.
June 2019

Journal of the American Chemical Society 2019 141 (30), 11929-11937. doi: 10.1021/jacs.9b03441

Shear resistance of an auxetic chiral mechanical metamaterial
Jin, S., Korkolis, Y. P., & Li, Y.
June 2019

International Journal of Solids and Structures, 174-175, 28–37. doi: 10.1016/j.ijsolstr.2019.06.005

Advanced Polymer Designs for Direct‐Ink‐Write 3D Printing
Li, L., Lin, Q., Tang, M., Duncan, A. J. E., & Ke, C.
May 2019

Chemistry – A European Journal, 25(46), 10768–10781. doi: 10.1002/chem.201900975

Hierarchical-Coassembly-Enabled 3D-Printing of Homogeneous and Heterogeneous Covalent Organic Frameworks
Zhang, M., Li, L., Lin, Q., Tang, M., Wu, Y., & Ke, C.
March 2019

Journal of the American Chemical Society 2019 141 (13), 5154-5158. doi: 10.1021/jacs.9b01561

Electrically-Transduced Chemical Sensors Based on Two-Dimensional Nanomaterials
Meng, Z., Stolz, R. M., Mendecki, L., & Mirica, K. A.
January 2019

Chemical Reviews 2019 119 (1), 478-598. doi: 10.1021/acs.chemrev.8b00311